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LOC100783502 basic pentacysteine 6 [ Glycine max (soybean) ]

Gene ID: 100783502, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100783502
Gene description
basic pentacysteine 6
Locus tag
GLYMA_04G026300v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100783502 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (2113543..2117746, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (2126587..2130760, complement)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 29 Neighboring gene small nucleolar RNA snoR64a Neighboring gene aldehyde oxidase GLOX-like Neighboring gene aldehyde oxidase GLOX1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic pentacysteine 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001255529.3 → NP_001242458.2  basic pentacysteine 6

    Status: VALIDATED

    Source sequence(s)
    ACUP04001279, BT093794
    UniProtKB/TrEMBL
    C6T8J3, I1JT52
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 338
    GAGA_bind; GAGA binding protein-like family

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2113543..2117746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006577741.4 → XP_006577804.1  basic pentacysteine 6 isoform X1

    See identical proteins and their annotated locations for XP_006577804.1

    UniProtKB/TrEMBL
    C6T8J3, I1JT52
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 338
    GAGA_bind; GAGA binding protein-like family

  2. XM_041014513.1 → XP_040870447.1  basic pentacysteine 6 isoform X1

    UniProtKB/TrEMBL
    C6T8J3, I1JT52
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 338
    GAGA_bind; GAGA binding protein-like family

  3. XM_041014512.1 → XP_040870446.1  basic pentacysteine 6 isoform X1

    UniProtKB/TrEMBL
    C6T8J3, I1JT52
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 338
    GAGA_bind; GAGA binding protein-like family
Nucleotide Protein
Heading Accession and Version

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