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LOC100781489 B3 domain-containing transcription factor NGA1 [ Glycine max (soybean) ]

Gene ID: 100781489, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100781489
Gene description
B3 domain-containing transcription factor NGA1
Locus tag
GLYMA_03G262200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100781489 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (46728755..46733998)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (45556552..45559234)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene soluble inorganic pyrophosphatase 1 Neighboring gene endoribonuclease Dicer homolog 1 Neighboring gene chlorophyll a-b binding protein 7, chloroplastic-like Neighboring gene probable inactive purple acid phosphatase 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription factor NGA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    46728755..46733998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006577298.4 → XP_006577361.1  B3 domain-containing transcription factor NGA1 isoform X1

    See identical proteins and their annotated locations for XP_006577361.1

    UniProtKB/TrEMBL
    K7KH74
    Conserved Domains (1) summary
    pfam02362
    Location:88 → 175
    B3; B3 DNA binding domain

  2. XM_041014255.1 → XP_040870189.1  B3 domain-containing transcription factor NGA1 isoform X1

    UniProtKB/TrEMBL
    K7KH74
    Conserved Domains (1) summary
    pfam02362
    Location:88 → 175
    B3; B3 DNA binding domain

  3. XM_014774063.3 → XP_014629549.1  B3 domain-containing transcription factor NGA1 isoform X1

    UniProtKB/TrEMBL
    K7KH74
    Conserved Domains (1) summary
    pfam02362
    Location:88 → 175
    B3; B3 DNA binding domain

  4. XM_003520841.5 → XP_003520889.1  B3 domain-containing transcription factor NGA1 isoform X1

    See identical proteins and their annotated locations for XP_003520889.1

    UniProtKB/TrEMBL
    K7KH74
    Conserved Domains (1) summary
    pfam02362
    Location:88 → 175
    B3; B3 DNA binding domain

  5. XM_006577300.4 → XP_006577363.1  B3 domain-containing transcription factor NGA1 isoform X1

    See identical proteins and their annotated locations for XP_006577363.1

    UniProtKB/TrEMBL
    K7KH74
    Conserved Domains (1) summary
    pfam02362
    Location:88 → 175
    B3; B3 DNA binding domain

  6. XM_041014256.1 → XP_040870190.1  B3 domain-containing transcription factor NGA1 isoform X2

    UniProtKB/TrEMBL
    A0A0R0KQ63
    Conserved Domains (1) summary
    pfam02362
    Location:38 → 125
    B3; B3 DNA binding domain

  7. XM_006577302.4 → XP_006577365.1  B3 domain-containing transcription factor NGA1 isoform X2

    UniProtKB/TrEMBL
    A0A0R0KQ63
    Conserved Domains (1) summary
    pfam02362
    Location:38 → 125
    B3; B3 DNA binding domain

RNA

  1. XR_005890827.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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