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LOC100780813 heat stress transcription factor B-4 [ Glycine max (soybean) ]

Gene ID: 100780813, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100780813
Gene description
heat stress transcription factor B-4
Locus tag
GLYMA_04G039600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
HSF
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Genomic context

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See LOC100780813 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (3138945..3141050, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (3152247..3153904, complement)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene THO complex subunit 5A Neighboring gene transcription factor HEC1 Neighboring gene probable E3 ubiquitin-protein ligase RHG1A Neighboring gene probable E3 ubiquitin-protein ligase RHG1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of six heat shock transcription factor cDNA clones from soybean. Czarnecka-Verner E, et al. Plant Mol Biol, 1995 Oct. PMID 7579166
  2. Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.). Schlueter JA, et al. Genetics, 2006 Oct. PMID 16888343, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor B-4
Names
heat shock transcription factor 31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    3138945..3141050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523897.5 → XP_003523945.1  heat stress transcription factor B-4

    See identical proteins and their annotated locations for XP_003523945.1

    UniProtKB/TrEMBL
    Q00M81, Q43456
    Conserved Domains (1) summary
    smart00415
    Location:22 → 114
    HSF; heat shock factor
Nucleotide Protein
Heading Accession and Version

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