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ARF8A auxin response factor 8a [ Glycine max (soybean) ]

Gene ID: 100780393, updated on 7-Dec-2023

Summary

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Gene symbol
ARF8A
Gene description
auxin response factor 8a
Locus tag
GLYMA_02G239600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmARF8a
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Genomic context

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See ARF8A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (44643079..44654049, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (42813460..42824492, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene probable acyl-activating enzyme 5, peroxisomal Neighboring gene probable acyl-activating enzyme 5, peroxisomal Neighboring gene uncharacterized LOC100499862 Neighboring gene transfer RNA serine (anticodon AGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development. Wang Y, et al. Plant Physiol, 2015 Jul. PMID 25941314, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    44643079..44654049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014769457.3 → XP_014624943.1  auxin response factor 8 isoform X1

    UniProtKB/TrEMBL
    I1JHQ9
    Conserved Domains (3) summary
    pfam02309
    Location:713 → 804
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:137 → 239
    B3; B3 DNA binding domain
    pfam06507
    Location:269 → 346
    Auxin_resp; Auxin response factor

  2. XM_006575403.4 → XP_006575466.1  auxin response factor 8 isoform X2

    UniProtKB/TrEMBL
    I1JHQ8, I1JHQ9
    Conserved Domains (3) summary
    pfam02309
    Location:712 → 801
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:128 → 230
    B3; B3 DNA binding domain
    pfam06507
    Location:260 → 337
    Auxin_resp; Auxin response factor

  3. XM_041008616.1 → XP_040864550.1  auxin response factor 8 isoform X4

    UniProtKB/TrEMBL
    I1JHQ9
    Conserved Domains (3) summary
    pfam02309
    Location:615 → 704
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:31 → 133
    B3; B3 DNA binding domain
    pfam06507
    Location:163 → 240
    Auxin_resp; Auxin response factor

  4. XM_041008615.1 → XP_040864549.1  auxin response factor 8 isoform X3

    UniProtKB/TrEMBL
    I1JHQ9, K7KAF4
    Conserved Domains (3) summary
    pfam02309
    Location:628 → 717
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:44 → 146
    B3; B3 DNA binding domain
    pfam06507
    Location:176 → 253
    Auxin_resp; Auxin response factor
Nucleotide Protein
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