U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100778470 zinc finger CCCH domain-containing protein 31 [ Glycine max (soybean) ]

Gene ID: 100778470, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100778470
Gene description
zinc finger CCCH domain-containing protein 31
Locus tag
GLYMA_03G144200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100778470 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (37172351..37176121)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (35987345..35991095)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100777411 Neighboring gene non-structural maintenance of chromosomes element 4 homolog A Neighboring gene uncharacterized LOC121174576 Neighboring gene zinc finger CCCH domain-containing protein 31

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger CCCH domain-containing protein 31

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    37172351..37176121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003521164.5 → XP_003521212.1  zinc finger CCCH domain-containing protein 31

    UniProtKB/TrEMBL
    C6T6Y4, I1JNK1
    Conserved Domains (3) summary
    smart00356
    Location:261 → 286
    ZnF_C3H1; zinc finger
    pfam00642
    Location:102 → 127
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd22464
    Location:171 → 236
    KH-I_AtC3H36_like; type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana zinc finger CCCH domain-containing proteins AtC3H36, AtC3H52 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases