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LOC100777698 protein tesmin/TSO1-like CXC 5 [ Glycine max (soybean) ]

Gene ID: 100777698, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100777698
Gene description
protein tesmin/TSO1-like CXC 5
Locus tag
GLYMA_09G191600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100777698 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (42523534..42531957)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (41632327..41640899)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT6.1 Neighboring gene uncharacterized LOC100777173 Neighboring gene peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 Neighboring gene probable protein ABIL5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tesmin/TSO1-like CXC 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42523534..42531957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006587458.4 → XP_006587521.1  protein tesmin/TSO1-like CXC 5 isoform X3

    UniProtKB/TrEMBL
    A0A0R0J749
    Conserved Domains (1) summary
    pfam03638
    Location:174 → 209
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_006587457.4 → XP_006587520.1  protein tesmin/TSO1-like CXC 5 isoform X2

    UniProtKB/TrEMBL
    A0A0R0J1T5
    Conserved Domains (1) summary
    pfam03638
    Location:157 → 192
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  3. XM_003533343.5 → XP_003533391.1  protein tesmin/TSO1-like CXC 5 isoform X1

    UniProtKB/TrEMBL
    A0A0R0J7V9, K7LET3
    Conserved Domains (1) summary
    pfam03638
    Location:174 → 209
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
Nucleotide Protein
Heading Accession and Version

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