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TGA03 bZIP transcription factor 3 [ Glycine max (soybean) ]

Gene ID: 100776311, updated on 7-Dec-2023

Summary

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Gene symbol
TGA03
Gene description
bZIP transcription factor 3
Locus tag
GLYMA_02G176800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmTGA03
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Genomic context

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See TGA03 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (30911073..30919786, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (29020022..29028838, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene FT-interacting protein 1 Neighboring gene uncharacterized LOC121173173 Neighboring gene uncharacterized LOC100815665 Neighboring gene protein MAIN-LIKE 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Characterization and Expression Analysis of Soybean TGA Transcription Factors Identified a Novel TGA Gene Involved in Drought and Salt Tolerance. Li B, et al. Front Plant Sci, 2019. PMID 31156656, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor TGA10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    30911073..30919786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014767971.3 → XP_014623457.1  bZIP transcription factor TGA10 isoform X3

    UniProtKB/TrEMBL
    A0A0R0KXK0, A0A0R0KY15
    Conserved Domains (3) summary
    cd14708
    Location:186 → 238
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:278 → 351
    DOG1; Seed dormancy control
    cl21496
    Location:59 → 121
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_006575159.4 → XP_006575222.1  bZIP transcription factor TGA10 isoform X2

    UniProtKB/TrEMBL
    A0A0R0KXK0, K7K962
    Conserved Domains (2) summary
    cd14708
    Location:189 → 241
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:281 → 354
    DOG1; Seed dormancy control

  3. XM_003519005.5 → XP_003519053.1  bZIP transcription factor TGA10 isoform X1

    See identical proteins and their annotated locations for XP_003519053.1

    UniProtKB/TrEMBL
    A0A0R0KXK0, K7K961
    Conserved Domains (2) summary
    cd14708
    Location:191 → 243
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:283 → 356
    DOG1; Seed dormancy control

  4. XM_006575160.4 → XP_006575223.1  bZIP transcription factor TGA10 isoform X4

    UniProtKB/TrEMBL
    A0A0R0KYA1
    Conserved Domains (2) summary
    cd14708
    Location:89 → 141
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:181 → 254
    DOG1; Seed dormancy control
Nucleotide Protein
Heading Accession and Version

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