U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TGA21 bZIP transcription factor [ Glycine max (soybean) ]

Gene ID: 100775882, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
TGA21
Gene description
bZIP transcription factor
Locus tag
GLYMA_14G167000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmTGA21
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TGA21 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (42187368..42192930, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (41307394..41312940, complement)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100808131 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene ABSCISIC ACID-INSENSITIVE 5-like protein 3 Neighboring gene uncharacterized LOC100776426

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome-Wide Characterization and Expression Analysis of Soybean TGA Transcription Factors Identified a Novel TGA Gene Involved in Drought and Salt Tolerance. Li B, et al. Front Plant Sci, 2019. PMID 31156656, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor TGA7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42187368..42192930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006596250.4 → XP_006596313.1  transcription factor TGA7 isoform X2

    See identical proteins and their annotated locations for XP_006596313.1

    UniProtKB/TrEMBL
    I1MAN9, I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:79 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:165 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:78 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_006596249.3 → XP_006596312.1  transcription factor TGA7 isoform X2

    See identical proteins and their annotated locations for XP_006596312.1

    UniProtKB/TrEMBL
    I1MAN9, I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:79 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:165 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:78 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_003544728.5 → XP_003544776.1  transcription factor TGA7 isoform X2

    See identical proteins and their annotated locations for XP_003544776.1

    UniProtKB/TrEMBL
    I1MAN9, I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:79 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:165 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:78 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. XM_026125561.2 → XP_025981346.1  transcription factor TGA7 isoform X1

    UniProtKB/TrEMBL
    I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:81 → 130
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:167 → 243
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 130
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  5. XM_006596248.4 → XP_006596311.1  transcription factor TGA7 isoform X2

    See identical proteins and their annotated locations for XP_006596311.1

    UniProtKB/TrEMBL
    I1MAN9, I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:79 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:165 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:78 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  6. XM_014767308.3 → XP_014622794.1  transcription factor TGA7 isoform X2

    UniProtKB/TrEMBL
    I1MAN9, I1MAP0
    Conserved Domains (3) summary
    cd14686
    Location:79 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:165 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:78 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases