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Atg16l1 autophagy related 16 like 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771530, updated on 8-Mar-2024

Summary

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Gene symbol
Atg16l1
Gene description
autophagy related 16 like 1
Locus tag
I79_021494
See related
Ensembl:ENSCGRG00015011652
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Atg16l1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615541.1 (3450..29703)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (439393839..439429183)

NW_003615541.1Genomic Context describing neighboring genes Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta Neighboring gene ubiquitin specific peptidase 40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-1
Names
Autophagy-related protein 16-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615541.1 Reference CriGri_1.0 Primary Assembly

    Range
    3450..29703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007653100.4 → XP_007651290.3  autophagy-related protein 16-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N2U6, A0A8C2N5U4
    Conserved Domains (3) summary
    cd00200
    Location:315 → 594
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    439393839..439429183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027397479.2 → XP_027253280.1  autophagy-related protein 16-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N2U6, A0A8C2N5U4
    Related
    ENSCGRP00015015394.1, ENSCGRT00015018866.2
    Conserved Domains (3) summary
    cd00200
    Location:315 → 594
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_027397480.2 → XP_027253281.1  autophagy-related protein 16-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2N2U6, A0A8C2N4N2
    Related
    ENSCGRP00015015443.1, ENSCGRT00015018928.2
Nucleotide Protein Strain
Heading Accession and Version

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