U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CYC1 transcription factor TCP7 [ Solanum lycopersicum (tomato) ]

Gene ID: 100736517, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
CYC1
Gene description
transcription factor TCP7
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
TCP; TCP7; SlCYC1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CYC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (52163561..52164611, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (51526307..51527357, complement)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene translation initiation factor eIF-2B subunit delta Neighboring gene proteasome maturation factor UMP1-like Neighboring gene uncharacterized LOC112940992 Neighboring gene transfer RNA aspartic acid (anticodon GUC)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Role of tomato BRANCHED1-like genes in the control of shoot branching. Martín-Trillo M, et al. Plant J, 2011 Aug. PMID 21554455
  2. Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy. Yang X, et al. Plant Cell, 2012 May. PMID 22649271, Free PMC Article
  3. Identification, cloning and characterization of the tomato TCP transcription factor family. Parapunova V, et al. BMC Plant Biol, 2014 Jun 6. PMID 24903607, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor TCP7
Names
CYCLOIDEA1
TCP transcription factor 7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246868.2 → NP_001233797.1  transcription factor TCP7

    See identical proteins and their annotated locations for NP_001233797.1

    Status: VALIDATED

    Source sequence(s)
    AEKE03003138, GQ496325
    UniProtKB/TrEMBL
    G3BGU7
    Conserved Domains (1) summary
    pfam03634
    Location:64 → 147
    TCP; TCP family transcription factor

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    52163561..52164611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.