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Prdm4 PR/SET domain 4 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100734481, updated on 8-Mar-2024

Summary

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Gene symbol
Prdm4
Gene description
PR/SET domain 4
See related
Ensembl:ENSCPOG00000022385
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Prdm4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (94124427..94143455, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176279.1 (469825..488842, complement)

NW_026947491.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene uncharacterized LOC111754263 Neighboring gene PWP1 homolog, endonuclein Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene BPI fold containing family C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947491.1 Reference mCavPor4.1

    Range
    94124427..94143455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023561238.2 → XP_023417006.1  PR domain zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A286Y543, H0VZF0
    Related
    ENSCPOP00000032632.1
    Conserved Domains (4) summary
    smart00317
    Location:428 → 535
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:618 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:622 → 642
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:634 → 659
    zf-H2C2_2; Zinc-finger double domain

  2. XM_063255538.1 → XP_063111608.1  PR domain zinc finger protein 4 isoform X1

  3. XM_063255537.1 → XP_063111607.1  PR domain zinc finger protein 4 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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