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Ubxn1 UBX domain protein 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100730541, updated on 8-Mar-2024

Summary

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Gene symbol
Ubxn1
Gene description
UBX domain protein 1
See related
Ensembl:ENSCPOG00000004750
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Ubxn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (57879003..57881903, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176375.1 (15091645..15094559)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene citrate synthase lysine methyltransferase Neighboring gene ubiquinol-cytochrome-c reductase complex assembly factor 3 Neighboring gene LRRN4 C-terminal like Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K48-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    57879003..57881903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023564313.2 → XP_023420081.1  UBX domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    H0V3W0
    Conserved Domains (2) summary
    cd01772
    Location:206 → 289
    SAKS1_UBX; SAKS1-like UBX domain
    cd14302
    Location:5 → 45
    UBA_UBXN1; UBA domain found in UBX domain-containing protein 1 (UBXN1) and similar proteins

  2. XM_063228275.1 → XP_063084345.1  UBX domain-containing protein 1 isoform X2

  3. XM_023564312.2 → XP_023420080.1  UBX domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    H0V3W0
    Related
    ENSCPOP00000004282.3
    Conserved Domains (2) summary
    cd01772
    Location:206 → 289
    SAKS1_UBX; SAKS1-like UBX domain
    cd14302
    Location:5 → 45
    UBA_UBXN1; UBA domain found in UBX domain-containing protein 1 (UBXN1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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