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Ddb1 damage specific DNA binding protein 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100724177, updated on 8-Mar-2024

Summary

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Gene symbol
Ddb1
Gene description
damage specific DNA binding protein 1
See related
Ensembl:ENSCPOG00000009956
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Ddb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (56688145..56710617)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176354.1 (9848681..9871167)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene lysosomal membrane ascorbate-dependent ferrireductase CYB561A3 Neighboring gene triokinase and FMN cyclase Neighboring gene von Willebrand factor C and EGF domains Neighboring gene mammaglobin-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA damage-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    56688145..56710617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003465950.5 → XP_003465998.1  DNA damage-binding protein 1

    UniProtKB/TrEMBL
    A0A286XPJ3, H0VFS4
    Related
    ENSCPOP00000027409.1
    Conserved Domains (3) summary
    COG5161
    Location:13 → 1104
    SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
    pfam03178
    Location:791 → 1099
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:75 → 543
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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