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Cpsf7 cleavage and polyadenylation specific factor 7 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100723902, updated on 3-Apr-2024

Summary

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Gene symbol
Cpsf7
Gene description
cleavage and polyadenylation specific factor 7
See related
Ensembl:ENSCPOG00000009980
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Cpsf7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (56621819..56642130)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176354.1 (9782376..9802659)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin 7 Neighboring gene leucine rich repeat containing 10B Neighboring gene stabilizer of axonemal microtubules 4 Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene transmembrane protein 216 Neighboring gene transmembrane protein 138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA alternative polyadenylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    56621819..56642130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063228237.1 → XP_063084307.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

    UniProtKB/TrEMBL
    H0VFU5

  2. XM_005001992.4 → XP_005002049.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

    UniProtKB/TrEMBL
    H0VFU5
    Related
    ENSCPOP00000008956.2
    Conserved Domains (1) summary
    cd12644
    Location:81 → 170
    RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

  3. XM_003465949.5 → XP_003465997.1  cleavage and polyadenylation specificity factor subunit 7 isoform X2

    Conserved Domains (1) summary
    cd12644
    Location:81 → 170
    RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

  4. XM_013148451.3 → XP_013003905.1  cleavage and polyadenylation specificity factor subunit 7 isoform X3

    Conserved Domains (1) summary
    cd12644
    Location:59 → 148
    RRM_CFIm59; RNA recognition motif of pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

  5. XM_063228238.1 → XP_063084308.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

    UniProtKB/TrEMBL
    H0VFU5
Nucleotide Protein
Heading Accession and Version

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