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Slirp SRA stem-loop interacting RNA binding protein [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100720156, updated on 8-Mar-2024

Summary

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Gene symbol
Slirp
Gene description
SRA stem-loop interacting RNA binding protein
See related
Ensembl:ENSCPOG00000001500
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Slirp in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947514.1 (24801945..24806970, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176399.1 (21479506..21484516)

NW_026947514.1Genomic Context describing neighboring genes Neighboring gene aarF domain containing kinase 1 Neighboring gene SNW domain containing 1 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SRA stem-loop-interacting RNA-binding protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947514.1 Reference mCavPor4.1

    Range
    24801945..24806970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003472455.5 → XP_003472503.1  SRA stem-loop-interacting RNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    H0UWC6
    Related
    ENSCPOP00000001356.3
    Conserved Domains (2) summary
    COG0724
    Location:22 → 97
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins
Nucleotide Protein
Heading Accession and Version

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