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Atxn3 ataxin 3 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100719182, updated on 10-Oct-2024

Summary

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Gene symbol
Atxn3
Gene description
ataxin 3
See related
Ensembl:ENSCPOG00000010887
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Atxn3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947514.1 (9606938..9643912, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176290.1 (2429824..2463331)

NW_026947514.1Genomic Context describing neighboring genes Neighboring gene alpha-1-antitrypsin-related protein-like Neighboring gene geranylgeranyl pyrophosphate synthase-like Neighboring gene thyroid hormone receptor interactor 11 Neighboring gene uncharacterized LOC134474229 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene cleavage and polyadenylation specific factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947514.1 Reference mCavPor4.1

    Range
    9606938..9643912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063241303.1 → XP_063097373.1  ataxin-3 isoform X2

  2. XM_013144399.3 → XP_012999853.1  ataxin-3 isoform X3

    UniProtKB/TrEMBL
    H0VHY0
    Related
    ENSCPOP00000009779.3
    Conserved Domains (2) summary
    pfam02099
    Location:9 → 163
    Josephin; Josephin
    pfam16619
    Location:264 → 317
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  3. XM_063241302.1 → XP_063097372.1  ataxin-3 isoform X1

  4. XM_063241305.1 → XP_063097375.1  ataxin-3 isoform X4

RNA

  1. XR_010044944.1 RNA Sequence

  2. XR_010044943.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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