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AP2b APETALA2-like protein AP2b [ Solanum lycopersicum (tomato) ]

Gene ID: 100620057, updated on 1-Nov-2024

Summary

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Gene symbol
AP2b
Gene description
APETALA2-like protein AP2b
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlAP2b
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Genomic context

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See AP2b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (52225082..52228779)
103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (36641340..36644984)

Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene protein IRX15-LIKE-like Neighboring gene CBS domain-containing protein CBSX1, chloroplastic Neighboring gene peroxidase 25 Neighboring gene mitogen-activated protein kinase kinase kinase 20-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
APETALA2-like protein AP2b
Names
APETALA2b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246979.2 → NP_001233908.2  APETALA2-like protein AP2b

    See identical proteins and their annotated locations for NP_001233908.2

    Status: VALIDATED

    Source sequence(s)
    AK247001, FS196163
    UniProtKB/TrEMBL
    A0A3Q7FKJ3, F6KQN3
    Conserved Domains (2) summary
    smart00380
    Location:255 → 318
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:163 → 225
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

    Range
    52225082..52228779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010317550.4 → XP_010315852.1  APETALA2-like protein AP2b isoform X1

    See identical proteins and their annotated locations for XP_010315852.1

    UniProtKB/TrEMBL
    A0A3Q7FKJ3, F6KQN3
    Conserved Domains (2) summary
    smart00380
    Location:255 → 318
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:163 → 225
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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