U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OTOP3 otopetrin 3 [ Sus scrofa (pig) ]

Gene ID: 100515337, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
OTOP3provided by VGNC
Official Full Name
otopetrin 3provided by VGNC
Primary source
VGNC:VGNC:91095
See related
Ensembl:ENSSSCG00000017220
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6311308..6323038, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (6296146..6323574, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene cerebellar degeneration related protein 2 like Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene HID1 domain containing Neighboring gene otopetrin 2 Neighboring gene USH1 protein network component sans

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
otopetrin-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6311308..6323038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066668.1 → XP_020922327.1  otopetrin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1SLZ5
    Conserved Domains (1) summary
    pfam03189
    Location:173 → 588
    Otopetrin

  2. XM_021066669.1 → XP_020922328.1  otopetrin-3 isoform X2

    UniProtKB/TrEMBL
    A0A4X1V5E0, A0A8D1SLZ5, F1RVV5
    Related
    ENSSSCP00000018243.3, ENSSSCT00000018745.5
    Conserved Domains (1) summary
    pfam03189
    Location:149 → 564
    Otopetrin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials