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OTOP3 otopetrin 3 [ Sus scrofa (pig) ]

Gene ID: 100515337, updated on 17-Aug-2024

Summary

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Official Symbol
OTOP3provided by VGNC
Official Full Name
otopetrin 3provided by VGNC
Primary source
VGNC:VGNC:91095
See related
Ensembl:ENSSSCG00000017220
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See OTOP3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6311308..6323038, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (6296146..6323574, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene cerebellar degeneration related protein 2 like Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene HID1 domain containing Neighboring gene otopetrin 2 Neighboring gene USH1 protein network component sans

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
otopetrin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6311308..6323038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066668.1 → XP_020922327.1  otopetrin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1SLZ5
    Conserved Domains (1) summary
    pfam03189
    Location:173 → 588
    Otopetrin

  2. XM_021066669.1 → XP_020922328.1  otopetrin-3 isoform X2

    UniProtKB/TrEMBL
    A0A4X1V5E0, A0A8D1SLZ5, F1RVV5
    Related
    ENSSSCP00000018243.3, ENSSSCT00000018745.5
    Conserved Domains (1) summary
    pfam03189
    Location:149 → 564
    Otopetrin
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials