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HROB homologous recombination factor with OB-fold [ Sus scrofa (pig) ]

Gene ID: 100514980, updated on 17-Aug-2024

Summary

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Official Symbol
HROBprovided by VGNC
Official Full Name
homologous recombination factor with OB-foldprovided by VGNC
Primary source
VGNC:VGNC:88975
See related
Ensembl:ENSSSCG00000017364
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C12H17orf53
Expression
Broad expression in ovary (RPKM 3.1), kidney (RPKM 0.5) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HROB in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (19044569..19077877, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (19338655..19344491, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene ataxin 7 like 3 Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene ankyrin repeat and SOCS box containing 16 Neighboring gene histone deacetylase 5 Neighboring gene glucose-6-phosphatase catalytic subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in recombinational repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C17orf53 homolog
Names
chromosome 12 C17orf53 homolog
homologous recombincation factor with OB-fold

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    19044569..19077877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066897.1 → XP_020922556.1  uncharacterized protein C17orf53 homolog isoform X4

    UniProtKB/TrEMBL
    A0A4X1TQY1
    Conserved Domains (2) summary
    pfam15072
    Location:405 → 488
    DUF4539; Domain of unknown function (DUF4539)
    cl26464
    Location:8 → 321
    Atrophin-1; Atrophin-1 family

  2. XM_021066894.1 → XP_020922553.1  uncharacterized protein C17orf53 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8D0J5Y1
    Related
    ENSSSCP00000018399.4, ENSSSCT00000018903.4
    Conserved Domains (2) summary
    pfam15072
    Location:490 → 573
    DUF4539; Domain of unknown function (DUF4539)
    cl26464
    Location:34 → 406
    Atrophin-1; Atrophin-1 family

  3. XM_021066895.1 → XP_020922554.1  uncharacterized protein C17orf53 homolog isoform X3

    UniProtKB/TrEMBL
    A0A4X1TQY1
    Conserved Domains (2) summary
    pfam15072
    Location:405 → 488
    DUF4539; Domain of unknown function (DUF4539)
    cl26464
    Location:98 → 321
    Atrophin-1; Atrophin-1 family

  4. XM_021066893.1 → XP_020922552.1  uncharacterized protein C17orf53 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8D0J5Y1
    Conserved Domains (2) summary
    pfam15072
    Location:490 → 573
    DUF4539; Domain of unknown function (DUF4539)
    cl26464
    Location:34 → 406
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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