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ABCA12 ATP binding cassette subfamily A member 12 [ Sus scrofa (pig) ]

Gene ID: 100512445, updated on 17-Aug-2024

Summary

Official Symbol
ABCA12provided by VGNC
Official Full Name
ATP binding cassette subfamily A member 12provided by VGNC
Primary source
VGNC:VGNC:95624
See related
Ensembl:ENSSSCG00000034282
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See ABCA12 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
53
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (117244704..117451009, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (129788302..129879763, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene BRCA1 associated RING domain 1 Neighboring gene uncharacterized LOC110257065 Neighboring gene U6 snRNA-associated Sm-like protein LSm6 pseudogene Neighboring gene 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase Neighboring gene fibronectin 1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 12
Names
ATP-binding cassette sub-family A member 12
ATP-binding cassette, sub-family A (ABC1), member 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    117244704..117451009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074975.1XP_020930634.1  LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 12

    UniProtKB/TrEMBL
    A0A287BNF0
    Related
    ENSSSCP00000058038.2, ENSSSCT00000042475.3
    Conserved Domains (1) summary
    cl28181
    Location:7522571
    AAA; ATPases associated with a variety of cellular activities