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LINC02408 long intergenic non-protein coding RNA 2408 [ Homo sapiens (human) ]

Gene ID: 100507175, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02408provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2408provided by HGNC
Primary source
HGNC:HGNC:53337
See related
Ensembl:ENSG00000203585 AllianceGenome:HGNC:53337
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02408 in Genome Data Viewer
Location:
12q15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67520082..67567131)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67499623..67546660)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (67913862..67960911)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369812 Neighboring gene uncharacterized LOC124903072 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:67842156-67842340 Neighboring gene long intergenic non-protein coding RNA 2420 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67863093-67863593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6626 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6627 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:67913523-67914188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:67948831-67949332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:67949333-67949832 Neighboring gene long intergenic non-protein coding RNA 2442 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:67983387-67983606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4641 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4642 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4643 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6630 Neighboring gene dual specificity tyrosine phosphorylation regulated kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103861.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK055974, DB315773
    Related
    ENST00000400306.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67520082..67567131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67499623..67546660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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