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LOC100502392 uncharacterized LOC100502392 [ Zea mays ]

Gene ID: 100502392, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100502392
Gene description
uncharacterized LOC100502392
Locus tag
ZEAMMB73_Zm00001d032040
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
SRS2; GRMZM2G042407
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Genomic context

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See LOC100502392 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (212020439..212021832)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (210206559..210207952)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene geraniol 8-hydroxylase-like Neighboring gene putative carboxylesterase 8 Neighboring gene uncharacterized LOC100286852 Neighboring gene uncharacterized LOC118476115

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein SHI RELATED SEQUENCE 2
Names
Protein SHI RELATED SEQUENCE 1
SRS transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001196870.1 → NP_001183799.1  Protein SHI RELATED SEQUENCE 2

    See identical proteins and their annotated locations for NP_001183799.1

    Status: PROVISIONAL

    Source sequence(s)
    BT087989
    UniProtKB/TrEMBL
    A0A317YDY8, C4JAZ2
    Conserved Domains (1) summary
    pfam05142
    Location:98 → 237
    DUF702; Domain of unknown function (DUF702)

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    212020439..212021832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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