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CCDC179 coiled-coil domain containing 179 [ Homo sapiens (human) ]

Gene ID: 100500938, updated on 17-Sep-2024

Summary

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Official Symbol
CCDC179provided by HGNC
Official Full Name
coiled-coil domain containing 179provided by HGNC
Primary source
HGNC:HGNC:44653
See related
Ensembl:ENSG00000255359 AllianceGenome:HGNC:44653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
Orthologs
mouse all
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Genomic context

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See CCDC179 in Genome Data Viewer
Location:
11p14.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (22846922..22860474, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (22967590..22981127, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (22868468..22882020, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene growth arrest specific 2 Neighboring gene RNA, 5S ribosomal pseudogene 338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4538 Neighboring gene Sharpr-MPRA regulatory region 5411 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:22813641-22814840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4539 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3207 Neighboring gene long intergenic non-protein coding RNA 2718 Neighboring gene Sharpr-MPRA regulatory region 14851 Neighboring gene small VCP interacting protein Neighboring gene uncharacterized LOC124902646 Neighboring gene NANOG hESC enhancer GRCh37_chr11:22944198-22944709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23054822-23055322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23055323-23055823 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:23210858-23211394 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:23325332-23326531 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:23380849-23382048 Neighboring gene programmed cell death 2 like pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 179

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195637.2 → NP_001182566.1  coiled-coil domain-containing protein 179

    See identical proteins and their annotated locations for NP_001182566.1

    Status: VALIDATED

    Source sequence(s)
    AC006299, AI651461
    Consensus CDS
    CCDS58127.1
    UniProtKB/Swiss-Prot
    H3BU77
    Related
    ENSP00000457511.1, ENST00000532798.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    22846922..22860474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011519802.3 → XP_011518104.1  coiled-coil domain-containing protein 179 isoform X1

  2. XM_011519803.3 → XP_011518105.1  coiled-coil domain-containing protein 179 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    22967590..22981127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054367364.1 → XP_054223339.1  coiled-coil domain-containing protein 179 isoform X1

  2. XM_054367365.1 → XP_054223340.1  coiled-coil domain-containing protein 179 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
H3BU77.1 GenPept UniProtKB/Swiss-Prot:H3BU77

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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