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med23 mediator complex subunit 23 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496574, updated on 4-Nov-2024

Summary

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Official Symbol
med23provided by Xenbase
Official Full Name
mediator complex subunit 23provided by Xenbase
Primary source
Xenbase:XB-GENE-1003994
See related
Ensembl:ENSXETG00000008243 AllianceGenome:Xenbase:XB-GENE-1003994
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 18. Orthologous to human MED23 (mediator complex subunit 23). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See med23 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
30
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (69826483..69875287, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (44585877..44634945)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene A-kinase anchoring protein 7 gene 2 Neighboring gene arginase 1 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 3 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    69826483..69875287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002936308.5 → XP_002936354.2  mediator of RNA polymerase II transcription subunit 23 isoform X2

    UniProtKB/TrEMBL
    A0A6I8RF30, A0A8J0QRZ8
    Related
    ENSXETP00000079899.2, ENSXETT00000072118.2
    Conserved Domains (1) summary
    pfam11573
    Location:1 → 1307
    Med23; Mediator complex subunit 23

  2. XM_002936307.5 → XP_002936353.2  mediator of RNA polymerase II transcription subunit 23 isoform X1

    UniProtKB/TrEMBL
    A0A8J0QS77, F7CHZ2
    Related
    ENSXETP00000018070.5, ENSXETT00000018070.5
    Conserved Domains (1) summary
    pfam11573
    Location:1 → 1313
    Med23; Mediator complex subunit 23
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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