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zbtb1 zinc finger and BTB domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496544, updated on 4-Nov-2024

Summary

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Official Symbol
zbtb1provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1006815
See related
Ensembl:ENSXETG00000035055 AllianceGenome:Xenbase:XB-GENE-1006815
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
znf909
Summary
Predicted to be located in nucleus. Orthologous to human ZBTB1 (zinc finger and BTB domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (100998232..101005142, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (80707578..80714876, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 36 Neighboring gene heat shock protein family A (Hsp70) member 2 Neighboring gene zinc finger and BTB domain containing 25 Neighboring gene A-kinase anchor protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    100998232..101005142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002938796.5 → XP_002938842.1  zinc finger and BTB domain-containing protein 1

    UniProtKB/TrEMBL
    F6U5H2
    Related
    ENSXETP00000048773.3, ENSXETT00000048773.5
    Conserved Domains (3) summary
    sd00017
    Location:552 → 572
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:636 → 656
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18192
    Location:3 → 116
    BTB_POZ_ZBTB1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 1 (ZBTB1)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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