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prdm15 PR domain 15 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100494779, updated on 4-Nov-2024

Summary

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Official Symbol
prdm15provided by Xenbase
Official Full Name
PR domain 15provided by Xenbase
Primary source
Xenbase:XB-GENE-1013930
See related
Ensembl:ENSXETG00000000068 AllianceGenome:Xenbase:XB-GENE-1013930
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRDM15 (PR/SET domain 15). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See prdm15 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (9676692..9704263)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (5681203..5707964)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uromodulin like 1 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene C2 calcium-dependent domain containing 2 Neighboring gene uncharacterized LOC116408746 Neighboring gene receptor interacting serine/threonine kinase 4 Neighboring gene transmembrane serine protease 2 gene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PR domain zinc finger protein 15
Names
PR domain containing 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9676692..9704263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958061.3 → XP_012813515.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A8J0S8N3
    Conserved Domains (3) summary
    COG5048
    Location:574 → 949
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:747 → 767
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:427 → 449
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_012958062.3 → XP_012813516.1  PR domain zinc finger protein 15 isoform X2

    UniProtKB/TrEMBL
    F7C1V5
    Related
    ENSXETP00000000120.4, ENSXETT00000000120.4
    Conserved Domains (3) summary
    COG5048
    Location:574 → 948
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:747 → 767
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:427 → 449
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_004912212.4 → XP_004912269.1  PR domain zinc finger protein 15 isoform X3

    UniProtKB/TrEMBL
    A0A8J0R1K2
    Conserved Domains (3) summary
    COG5048
    Location:574 → 942
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:747 → 767
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:427 → 449
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_002941288.5 → XP_002941334.2  PR domain zinc finger protein 15 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QLK8
    Related
    ENSXETP00000069443.2, ENSXETT00000104099.2
    Conserved Domains (3) summary
    COG5048
    Location:574 → 941
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:747 → 767
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:427 → 449
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein Strain
Heading Accession and Version

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