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lrp3 LDL receptor related protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100494496, updated on 4-Nov-2024

Summary

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Official Symbol
lrp3provided by Xenbase
Official Full Name
LDL receptor related protein 3provided by Xenbase
Primary source
Xenbase:XB-GENE-921409
See related
Ensembl:ENSXETG00000033897 AllianceGenome:Xenbase:XB-GENE-921409
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in clathrin-coated pit. Orthologous to human LRP3 (LDL receptor related protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See lrp3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (68981179..69017321, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (20861387..20897917, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene CCAAT enhancer binding protein alpha Neighboring gene solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene WD repeat domain 88

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 3
Names
low density lipoprotein receptor-related protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    68981179..69017321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002935794.5 → XP_002935840.2  low-density lipoprotein receptor-related protein 3

    UniProtKB/TrEMBL
    A0A6I8Q3J3
    Related
    ENSXETP00000064118.2, ENSXETT00000062299.3
    Conserved Domains (3) summary
    cd00041
    Location:37 → 148
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00112
    Location:158 → 192
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:436 → 471
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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