tenm1 teneurin transmembrane protein 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: tenm1provided by Xenbase
Official Full Name: teneurin transmembrane protein 1provided by Xenbase
Primary source: Xenbase:XB-GENE-1010476
See related: Ensembl:ENSXETG00000032843
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 33

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	8	NC_030684.2 (49080970..49454947, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	8	NC_030684.1 (27871534..28120375, complement)

Chromosome 8 - NC_030684.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: teneurin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

49080970..49454947 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031891499.1 → XP_031747359.1 teneurin-1 isoform X1

UniProtKB/TrEMBL

A0A6I8QJV4, A0A6I8RDM9

Related

ENSXETP00000068825.2, ENSXETT00000075625.2

Conserved Domains (7) summary

COG3209
Location:1866 → 2430

RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]

cl18310
Location:1163 → 1523

NHL; NHL repeat unit of beta-propeller proteins

pfam05593
Location:1640 → 1671

RHS_repeat; RHS Repeat

pfam06484
Location:23 → 312

Ten_N; Teneurin Intracellular Region

pfam15636
Location:2643 → 2720

Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin

NF033662
Location:798 → 823

acid_disulf_rpt; acidic double-disulfide repeat

NF033759
Location:527 → 731

exchanger_TraA; outer membrane exchange protein TraA
XM_031891500.1 → XP_031747360.1 teneurin-1 isoform X2

UniProtKB/TrEMBL

A0A6I8QSZ6, A0A6I8SWH5

Related

ENSXETP00000075406.2, ENSXETT00000087993.2

Conserved Domains (7) summary

COG3209
Location:1852 → 2416

RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]

cl18310
Location:1149 → 1509

NHL; NHL repeat unit of beta-propeller proteins

pfam05593
Location:1626 → 1657

RHS_repeat; RHS Repeat

pfam06484
Location:23 → 298

Ten_N; Teneurin Intracellular Region

pfam15636
Location:2629 → 2706

Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin

NF033662
Location:784 → 809

acid_disulf_rpt; acidic double-disulfide repeat

NF033759
Location:513 → 717

exchanger_TraA; outer membrane exchange protein TraA