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zbtb16 zinc finger and BTB domain containing 16 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100491672, updated on 4-Nov-2024

Summary

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Official Symbol
zbtb16provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 16provided by Xenbase
Primary source
Xenbase:XB-GENE-478310
See related
Ensembl:ENSXETG00000033139 AllianceGenome:Xenbase:XB-GENE-478310
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
plzf
Summary
Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in acute promyelocytic leukemia. Orthologous to human ZBTB16 (zinc finger and BTB domain containing 16). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb16 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (85513815..85604132)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (73521222..73611429, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene nicotinamide N-methyltransferase Neighboring gene uncharacterized LOC116412450 Neighboring gene uncharacterized LOC116412331 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic Neighboring gene 5-hydroxytryptamine (serotonin) receptor 3B, ionotropic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    85513815..85604132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004916095.4 → XP_004916152.1  zinc finger and BTB domain-containing protein 16 isoform X1

    See identical proteins and their annotated locations for XP_004916152.1

    UniProtKB/TrEMBL
    A0A6I8PTS6
    Conserved Domains (5) summary
    smart00225
    Location:35 → 106
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:449 → 610
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:508 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 106
    BTB; BTB/POZ domain
    pfam13465
    Location:549 → 572
    zf-H2C2_2; Zinc-finger double domain

  2. XM_004916097.4 → XP_004916154.1  zinc finger and BTB domain-containing protein 16 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R651
    Conserved Domains (3) summary
    COG5048
    Location:435 → 609
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18205
    Location:16 → 122
    BTB_POZ_ZBTB16_PLZF; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 16 (ZBTB16)

  3. XM_004916096.4 → XP_004916153.1  zinc finger and BTB domain-containing protein 16 isoform X1

    See identical proteins and their annotated locations for XP_004916153.1

    UniProtKB/TrEMBL
    A0A6I8PTS6
    Related
    ENSXETP00000058317.3, ENSXETT00000064952.3
    Conserved Domains (5) summary
    smart00225
    Location:35 → 106
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:449 → 610
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:508 → 528
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:25 → 106
    BTB; BTB/POZ domain
    pfam13465
    Location:549 → 572
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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