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stab1 stabilin 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100491533, updated on 4-Nov-2024

Summary

Official Symbol
stab1provided by Xenbase
Official Full Name
stabilin 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6047819
See related
AllianceGenome:Xenbase:XB-GENE-6047819
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable hyaluronic acid binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See stab1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
66
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (153779513..153933190, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683693.1 (227..8269, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 4 Neighboring gene 5'-nucleotidase domain containing 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
LOW QUALITY PROTEIN: stabilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    153779513..153933190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901368.1XP_031757228.1  LOW QUALITY PROTEIN: stabilin-1

    UniProtKB/TrEMBL
    A0A8J1JH71
    Conserved Domains (6) summary
    smart00554
    Location:23022395
    FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
    pfam02469
    Location:16841812
    Fasciclin; Fasciclin domain
    pfam12947
    Location:20312066
    EGF_3; EGF domain
    NF033759
    Location:12871462
    exchanger_TraA; outer membrane exchange protein TraA
    cl02612
    Location:21442236
    Link_Domain; The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor ...
    cl21504
    Location:19992025
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...