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bend3 BEN domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490658, updated on 4-Nov-2024

Summary

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Official Symbol
bend3provided by Xenbase
Official Full Name
BEN domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-6051071
See related
AllianceGenome:Xenbase:XB-GENE-6051071
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable DNA binding activity. Predicted to act upstream of or within rDNA heterochromatin formation. Predicted to be located in heterochromatin. Orthologous to human BEND3 (BEN domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See bend3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (79025225..79040189)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (76054899..76069223)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene sine oculis binding protein homolog Neighboring gene decaprenyl diphosphate synthase subunit 2 Neighboring gene uncharacterized LOC100490489 Neighboring gene mitochondrial transcription rescue factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within rDNA heterochromatin formation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in heterochromatin IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BEN domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    79025225..79040189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937159.5 → XP_002937205.1  BEN domain-containing protein 3

    UniProtKB/TrEMBL
    A0A8J0QT43
    Conserved Domains (1) summary
    smart01025
    Location:745 → 824
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials