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zbtb33 zinc finger and BTB domain containing 33 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490577, updated on 4-Nov-2024

Summary

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Official Symbol
zbtb33provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 33provided by Xenbase
Primary source
Xenbase:XB-GENE-486567
See related
Ensembl:ENSXETG00000049420 AllianceGenome:Xenbase:XB-GENE-486567
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
kaiso; Xkaiso
Summary
Orthologous to human ZBTB33 (zinc finger and BTB domain containing 33). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb33 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (45945637..45953090)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (24765797..24773443)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene aconitate decarboxylase 1 like gene a [provisional] Neighboring gene glutamine amidotransferase like class 1 domain containing 3A-like gene b1 Neighboring gene glutamine amidotransferase like class 1 domain containing 3A-like gene b2 Neighboring gene transmembrane protein 255A Neighboring gene ATPase, Na+/K+ transporting, beta 4 polypeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcriptional regulator Kaiso

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    45945637..45953090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002931803.5 → XP_002931849.1  transcriptional regulator Kaiso isoform X2

    UniProtKB/TrEMBL
    A0A803JBN0, A0A803JFU1
    Related
    ENSXETP00000108832.1, ENSXETT00000117558.1
    Conserved Domains (5) summary
    sd00017
    Location:503 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18219
    Location:11 → 116
    BTB_POZ_ZBTB33_KAISO; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kaiso
    pfam03154
    Location:177 → 374
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:515 → 538
    zf-H2C2_2; Zinc-finger double domain
    pfam18868
    Location:551 → 617
    zf-C2H2_3rep; Zinc finger C2H2-type, 3 repeats

  2. XM_004915749.4 → XP_004915806.1  transcriptional regulator Kaiso isoform X1

    UniProtKB/TrEMBL
    A0A803J8K9, A0A803JBN0
    Related
    ENSXETP00000104212.1, ENSXETT00000117921.1
    Conserved Domains (5) summary
    sd00017
    Location:521 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18219
    Location:29 → 134
    BTB_POZ_ZBTB33_KAISO; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kaiso
    pfam03154
    Location:195 → 392
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:533 → 556
    zf-H2C2_2; Zinc-finger double domain
    pfam18868
    Location:569 → 635
    zf-C2H2_3rep; Zinc finger C2H2-type, 3 repeats
Nucleotide Protein Strain
Heading Accession and Version

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