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lama4 laminin subunit alpha 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489161, updated on 17-Aug-2024

Summary

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Official Symbol
lama4provided by Xenbase
Official Full Name
laminin subunit alpha 4provided by Xenbase
Primary source
Xenbase:XB-GENE-1004770
See related
Ensembl:ENSXETG00000007336
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See lama4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
40
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (76549047..76638157)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (73526793..73618281)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene tubulin epsilon 1 Neighboring gene cellular communication network factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell migration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
laminin subunit alpha-4
Names
laminin, alpha 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    76549047..76638157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002936937.5 → XP_002936983.2  laminin subunit alpha-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SML1
    Related
    ENSXETP00000098858.2, ENSXETT00000084370.2
    Conserved Domains (7) summary
    pfam05483
    Location:519 → 837
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    smart00180
    Location:289 → 333
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:975 → 1106
    LamG; Laminin G domain
    cd00055
    Location:188 → 240
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:1743 → 1889
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:393 → 649
    Laminin_I; Laminin Domain I
    pfam06009
    Location:829 → 958
    Laminin_II; Laminin Domain II

  2. XM_031902347.1 → XP_031758207.1  laminin subunit alpha-4 isoform X2

    UniProtKB/TrEMBL
    F6VWX9
    Related
    ENSXETP00000015975.5, ENSXETT00000015975.5
    Conserved Domains (7) summary
    pfam05483
    Location:488 → 806
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    smart00180
    Location:289 → 333
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:944 → 1075
    LamG; Laminin G domain
    cd00055
    Location:188 → 240
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:1712 → 1858
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:362 → 618
    Laminin_I; Laminin Domain I
    pfam06009
    Location:798 → 927
    Laminin_II; Laminin Domain II
Nucleotide Protein Strain
Heading Accession and Version

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