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tbx4 T-box 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100488041, updated on 17-Aug-2024

Summary

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Official Symbol
tbx4provided by Xenbase
Official Full Name
T-box 4provided by Xenbase
Primary source
Xenbase:XB-GENE-951382
See related
Ensembl:ENSXETG00000010718
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See tbx4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (92040949..92141078, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (87923449..88023151, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 2 Neighboring gene BRCA1 interacting helicase 1 Neighboring gene uncharacterized LOC101731542 Neighboring gene T-box 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryonic hindlimb morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryonic pelvic fin morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pelvic fin development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
T-box transcription factor TBX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    92040949..92141078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933826.4 → XP_002933872.1  T-box transcription factor TBX4

    UniProtKB/TrEMBL
    A0A6I8QXA7, F6ULJ0
    Related
    ENSXETP00000074244.1, ENSXETT00000074370.2
    Conserved Domains (1) summary
    cd00182
    Location:55 → 244
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials