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LOC100486435 DnaJ heat shock protein family (Hsp40) member C27 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486435, updated on 4-Nov-2024

Summary

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Official Symbol
LOC100486435provided by Xenbase
Official Full Name
DnaJ heat shock protein family (Hsp40) member C27provided by Xenbase
Primary source
Xenbase:XB-GENE-29078339
See related
Ensembl:ENSXETG00000021184 AllianceGenome:Xenbase:XB-GENE-29078339
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable GTP binding activity and GTPase activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC100486435 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (153021865..153038609, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684056.1 (44683..51475, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene centromere protein O Neighboring gene DnaJ heat shock protein family (Hsp40) member C27 Neighboring gene EFR3 homolog B Neighboring gene proopiomelanocortin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dnaJ homolog subfamily C member 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    153021865..153038609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903100.1 → XP_031758960.1  dnaJ homolog subfamily C member 27

    UniProtKB/TrEMBL
    F6YM82
    Related
    ENSXETP00000045807.5, ENSXETT00000045807.5
    Conserved Domains (2) summary
    cd06257
    Location:217 → 264
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cd04119
    Location:17 → 184
    RJL; Rab GTPase family J-like (RabJ-like)

  2. XM_031903099.1 → XP_031758959.1  dnaJ homolog subfamily C member 27

    UniProtKB/TrEMBL
    F6YM82
    Conserved Domains (2) summary
    cd06257
    Location:217 → 264
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    cd04119
    Location:17 → 184
    RJL; Rab GTPase family J-like (RabJ-like)
Nucleotide Protein Strain
Heading Accession and Version

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