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ifngr2.2 interferon gamma receptor 2 (interferon gamma transducer 1), gene 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100485298, updated on 4-Nov-2024

Summary

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Official Symbol
ifngr2.2provided by Xenbase
Official Full Name
interferon gamma receptor 2 (interferon gamma transducer 1), gene 2provided by Xenbase
Primary source
Xenbase:XB-GENE-855493
See related
Ensembl:ENSXETG00000026950 AllianceGenome:Xenbase:XB-GENE-855493
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in membrane. Human ortholog(s) of this gene implicated in immunodeficiency 28. Orthologous to human IFNGR2 (interferon gamma receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ifngr2.2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (14693018..14710391)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (10590856..10607388)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 50B Neighboring gene interferon alpha and beta receptor subunit 1 Neighboring gene interferon gamma receptor 2 (interferon gamma transducer 1), gene 1 Neighboring gene interleukin 10 receptor subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
interferon gamma receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    14693018..14710391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018091402.2 → XP_017946891.1  interferon gamma receptor 2 isoform X2

    UniProtKB/TrEMBL
    A0A803JJU7
    Related
    ENSXETP00000108220.1, ENSXETT00000121784.1
    Conserved Domains (1) summary
    cl21522
    Location:25 → 113
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_004912139.4 → XP_004912196.1  interferon gamma receptor 2 isoform X1

    UniProtKB/TrEMBL
    F6V446
    Related
    ENSXETP00000000073.5, ENSXETT00000000073.5
    Conserved Domains (1) summary
    cl21522
    Location:39 → 127
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RNA

  1. XR_208365.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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