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LOC100382879 uncharacterized LOC100382879 [ Zea mays ]

Gene ID: 100382879, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100382879
Gene description
uncharacterized LOC100382879
Locus tag
ZEAMMB73_Zm00001d045887
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
gpm902; GRMZM2G395842
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Genomic context

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See LOC100382879 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (47573840..47606828)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (45716435..45749327)

Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like Neighboring gene uncharacterized LOC103638331 Neighboring gene pollen-specific arabinogalacta protein BAN102 Neighboring gene uncharacterized LOC100273847

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase makorin; uncharacterized protein LOC100382879
Names
C3H5 C3H type transcription factor
putative RING zinc finger domain superfamily protein
NP_001169041.1
XP_008658836.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001175570.1 → NP_001169041.1  E3 ubiquitin-protein ligase makorin

    See identical proteins and their annotated locations for NP_001169041.1

    Status: PROVISIONAL

    Source sequence(s)
    BT065629
    UniProtKB/TrEMBL
    A0A1D6NZP3, A0A3L6DEX4, A0A3L6DEZ1, A0A3L6DGE4, C0PBG0, K0DG29
    Conserved Domains (3) summary
    PHA03096
    Location:161 → 302
    PHA03096; p28-like protein; Provisional
    pfam15663
    Location:1 → 60
    zf-CCCH_3; Zinc-finger containing family
    cd16521
    Location:215 → 275
    RING-HC_MKRN; RING finger, HC subclass, found in the makorin (MKRN) proteins

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    47573840..47606828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008660614.3 → XP_008658836.1  uncharacterized protein LOC100382879 isoform X1

    See identical proteins and their annotated locations for XP_008658836.1

    UniProtKB/TrEMBL
    A0A1D6NZP3, A0A3L6DEX4, A0A3L6DEZ1, A0A3L6DGE4, C0PBG0, K0DG29
    Conserved Domains (3) summary
    PHA03096
    Location:161 → 302
    PHA03096; p28-like protein; Provisional
    pfam15663
    Location:1 → 60
    zf-CCCH_3; Zinc-finger containing family
    cd16521
    Location:215 → 275
    RING-HC_MKRN; RING finger, HC subclass, found in the makorin (MKRN) proteins

RNA

  1. XR_004852496.1 RNA Sequence

  2. XR_004852494.1 RNA Sequence

  3. XR_004852495.1 RNA Sequence

  4. XR_004852493.1 RNA Sequence

  5. XR_558326.4 RNA Sequence

  6. XR_558330.4 RNA Sequence

  7. XR_558329.3 RNA Sequence

  8. XR_558328.3 RNA Sequence

  9. XR_004852497.1 RNA Sequence

  10. XR_004852498.1 RNA Sequence

  11. XR_558333.4 RNA Sequence

  12. XR_004852492.1 RNA Sequence

  13. XR_004852491.1 RNA Sequence

  14. XR_004852490.1 RNA Sequence

  15. XR_004852500.1 RNA Sequence

  16. XR_004852499.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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