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synj1.S synaptojanin 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100380968, updated on 18-Sep-2024

Summary

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Official Symbol
synj1.S
Official Full Name
synaptojanin 1 S homeolog
Primary source
Xenbase:XB-GENE-956333
Locus tag
XELAEV_18014296mg
See related
EnsemblRapid:ENSXLAG00005020537
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
synj1
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Genomic context

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See synj1.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
32
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (19540807..19604734, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (19481296..19545107, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C S homeolog Neighboring gene cilia and flagella associated protein 298 S homeolog Neighboring gene PAX3 and PAX7 binding protein 1 S homeolog Neighboring gene exosomal polycystin 1 interacting protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in presynapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    19540807..19604734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583407.1 → XP_041439341.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8J1MDB9
    Conserved Domains (4) summary
    PHA03247
    Location:1058 → 1427
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 481
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:534 → 869
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:868 → 1010
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_041583404.1 → XP_041439338.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1MCR2
    Conserved Domains (4) summary
    PHA03247
    Location:1073 → 1442
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 481
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:534 → 869
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:868 → 1010
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_018248881.2 → XP_018104370.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8J0UJD8
    Related
    ENSXLAP00005060177.1, ENSXLAT00005061626.1

  4. XM_018248879.2 → XP_018104368.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A1L8H586, A0A974DHP0

  5. XM_018248876.2 → XP_018104365.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0UJ96

  6. XM_041583406.1 → XP_041439340.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8J1ME46
    Conserved Domains (4) summary
    PHA03247
    Location:1061 → 1430
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_041583408.1 → XP_041439342.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8J1MCB1
    Conserved Domains (5) summary
    PHA02682
    Location:1151 → 1257
    PHA02682; ORF080 virion core protein; Provisional
    PHA03247
    Location:1075 → 1418
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_041583405.1 → XP_041439339.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8J1MCA0
    Conserved Domains (5) summary
    PHA02682
    Location:1165 → 1271
    PHA02682; ORF080 virion core protein; Provisional
    PHA03247
    Location:1075 → 1432
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_041583402.1 → XP_041439336.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MCA6
    Conserved Domains (4) summary
    PHA03247
    Location:1076 → 1445
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  10. XM_041583403.1 → XP_041439337.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MCA6
    Conserved Domains (4) summary
    PHA03247
    Location:1076 → 1445
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_041583410.1 → XP_041439344.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A8J1MCA5
    Related
    ENSXLAP00005060195.1, ENSXLAT00005061644.1
    Conserved Domains (4) summary
    PHA03247
    Location:1076 → 1280
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily

  12. XM_041583409.1 → XP_041439343.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A8J1MCR6
    Related
    ENSXLAP00005060174.1, ENSXLAT00005061623.1
    Conserved Domains (4) summary
    PHA03247
    Location:1076 → 1280
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:9 → 484
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl00490
    Location:537 → 872
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:871 → 1013
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
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