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caps2 calcyphosine 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100380015, updated on 17-Aug-2024

Summary

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Official Symbol
caps2provided by Xenbase
Official Full Name
calcyphosine 2provided by Xenbase
Primary source
Xenbase:XB-GENE-958065
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See caps2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (61018855..61059279, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (51549876..51587985, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105946930 Neighboring gene potassium channel, voltage gated Shaw related subfamily C, member 2 Neighboring gene GLIPR1-like protein 1 Neighboring gene coiled-coil domain-containing protein 107

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
calcyphosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    61018855..61059279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002939946.5 → XP_002939992.2  calcyphosin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0QVS3
    Conserved Domains (2) summary
    pfam13499
    Location:472 → 536
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:441 → 499
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_012959913.3 → XP_012815367.2  calcyphosin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SIH1
    Conserved Domains (2) summary
    pfam13499
    Location:496 → 560
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:465 → 523
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_004912953.4 → XP_004913010.2  calcyphosin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0R2T0
    Conserved Domains (2) summary
    pfam13499
    Location:501 → 565
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:470 → 528
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein Strain
Heading Accession and Version

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