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mfap3l microfibril associated protein 3 like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379896, updated on 4-Nov-2024

Summary

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Official Symbol
mfap3lprovided by Xenbase
Official Full Name
microfibril associated protein 3 likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-940784
See related
Ensembl:ENSXETG00000023144 AllianceGenome:Xenbase:XB-GENE-940784
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in membrane. Orthologous to human MFAP3L (microfibril associated protein 3 like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See mfap3l in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (49896601..49917229)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (40648032..40668436)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase like 6 Neighboring gene uncharacterized LOC105946250 Neighboring gene uncharacterized LOC116408469 Neighboring gene uncharacterized LOC105946247 Neighboring gene aminoadipate aminotransferase Neighboring gene chloride channel, voltage-sensitive 3 Neighboring gene histone PARylation factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
microfibrillar-associated protein 3-like
Names
microfibrillar associated protein 3 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    49896601..49917229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911168.4 → XP_004911225.1  microfibrillar-associated protein 3-like isoform X2

    See identical proteins and their annotated locations for XP_004911225.1

    UniProtKB/TrEMBL
    A0A803KE04, A0A8J0QK12
    Conserved Domains (1) summary
    cd00096
    Location:62 → 131
    Ig; Immunoglobulin domain

  2. XM_018095820.2 → XP_017951309.1  microfibrillar-associated protein 3-like isoform X1

    UniProtKB/TrEMBL
    A0A803KE04, F6ZL14
    Related
    ENSXETP00000050054.4, ENSXETT00000050054.5
    Conserved Domains (1) summary
    pfam07679
    Location:75 → 164
    I-set; Immunoglobulin I-set domain

  3. XM_002933321.5 → XP_002933367.1  microfibrillar-associated protein 3-like isoform X2

    See identical proteins and their annotated locations for XP_002933367.1

    UniProtKB/TrEMBL
    A0A803KE04, A0A8J0QK12
    Conserved Domains (1) summary
    cd00096
    Location:62 → 131
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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