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chd7 chromodomain helicase DNA binding protein 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100379668, updated on 4-Nov-2024

Summary

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Official Symbol
chd7provided by Xenbase
Official Full Name
chromodomain helicase DNA binding protein 7provided by Xenbase
Primary source
Xenbase:XB-GENE-877230
See related
Ensembl:ENSXETG00000026004 AllianceGenome:Xenbase:XB-GENE-877230
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable several functions, including ATP binding activity; ATP-dependent chromatin remodeler activity; and DNA binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See chd7 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
38
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (117133718..117218693)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (102261618..102347253)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase VIII Neighboring gene RAB2A, member RAS oncogene family Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene uncharacterized LOC116411593 Neighboring gene uncharacterized LOC116411598 Neighboring gene clavesin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    117133718..117218693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002936112.5 → XP_002936158.2  chromodomain-helicase-DNA-binding protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A8J0QNT2, F7A338
    Related
    ENSXETP00000073954.2, ENSXETT00000094266.2
    Conserved Domains (6) summary
    smart00592
    Location:2629 → 2673
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:955 → 1482
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam09606
    Location:15 → 469
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd18663
    Location:866 → 923
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:783 → 848
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    pfam07533
    Location:2550 → 2591
    BRK; BRK domain

  2. XM_004915184.4 → XP_004915241.1  chromodomain-helicase-DNA-binding protein 7 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R4T8, F7A338
    Conserved Domains (6) summary
    smart00592
    Location:2628 → 2672
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:955 → 1482
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam09606
    Location:15 → 469
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd18663
    Location:866 → 923
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:783 → 848
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    pfam07533
    Location:2550 → 2591
    BRK; BRK domain
Nucleotide Protein Strain
Heading Accession and Version

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