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Style2.1 transcription factor style2.1 [ Solanum lycopersicum (tomato) ]

Gene ID: 100301942, updated on 1-Nov-2024

Summary

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Gene symbol
Style2.1
Gene description
transcription factor style2.1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See Style2.1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (66444877..66446575, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (50763432..50765127, complement)

Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ATHB-13 Neighboring gene uncharacterized protein At3g28850 Neighboring gene ABC transporter B family member 4 Neighboring gene tubulin alpha chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes. Chen KY, et al. Science, 2007 Oct 26. PMID 17962563
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor style2.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247361.1 → NP_001234290.1  transcription factor style2.1

    See identical proteins and their annotated locations for NP_001234290.1

    Status: VALIDATED

    Source sequence(s)
    EU161281
    UniProtKB/TrEMBL
    B6CG44
    Conserved Domains (1) summary
    PLN03217
    Location:16 → 91
    PLN03217; transcription factor ATBS1; Provisional

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

    Range
    66444877..66446575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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