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LOC100286123 uncharacterized LOC100286123 [ Zea mays ]

Gene ID: 100286123, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100286123
Gene description
uncharacterized LOC100286123
Locus tag
ZEAMMB73_Zm00001d015743
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
bZIP61; gpm254; GRMZM2G137046
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Genomic context

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See LOC100286123 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (115028580..115033762)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (115451277..115456440)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109939752 Neighboring gene uncharacterized LOC100277906 Neighboring gene uncharacterized LOC103626800 Neighboring gene ring canal kelch

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in red or far-red light signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to far red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transcription factor HY5; uncharacterized protein LOC100286123
Names
8636466_PCR
bZIP transcription factor
gnp_8636466_PCR
putative bZIP transcription factor superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159011.2 → NP_001152483.1  Transcription factor HY5

    See identical proteins and their annotated locations for NP_001152483.1

    Status: VALIDATED

    Source sequence(s)
    BT063353
    UniProtKB/TrEMBL
    A0A1D6H3I5, B6UEP1
    Conserved Domains (1) summary
    cd14704
    Location:92 → 143
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    115028580..115033762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008645650.3 → XP_008643872.1  uncharacterized protein LOC100286123 isoform X1

    See identical proteins and their annotated locations for XP_008643872.1

    UniProtKB/TrEMBL
    A0A804U7R8, B6STM9
    Conserved Domains (1) summary
    cd14704
    Location:62 → 113
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain

  2. XM_008645649.4 → XP_008643871.1  uncharacterized protein LOC100286123 isoform X1

    See identical proteins and their annotated locations for XP_008643871.1

    UniProtKB/TrEMBL
    A0A804U7R8, B6STM9
    Conserved Domains (1) summary
    cd14704
    Location:62 → 113
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001154165.1: Suppressed sequence

    Description
    NM_001154165.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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