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LOC100285990 uncharacterized LOC100285990 [ Zea mays ]

Gene ID: 100285990, updated on 18-Aug-2023

Summary

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Gene symbol
LOC100285990
Gene description
uncharacterized LOC100285990
Locus tag
ZEAMMB73_Zm00001d033262
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
LSD1; GRMZM2G173425
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Genomic context

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See LOC100285990 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (258431063..258435471)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (256420336..256424669)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene Speckle-type POZ protein Neighboring gene protein recA Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene MYB-type transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Protein LOL3; uncharacterized protein LOC100285990
Names
LSD1-like zinc finger protein
zinc finger protein LSD2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001158878.2 → NP_001152350.1  Protein LOL3 precursor

    See identical proteins and their annotated locations for NP_001152350.1

    Status: VALIDATED

    Source sequence(s)
    CO531935, FL073356, GGGU01002058, GGGX01011737
    UniProtKB/TrEMBL
    A0A1D6KX97, B6UCT4
    Conserved Domains (2) summary
    TIGR01053
    Location:43 → 73
    LSD1; zinc finger domain, LSD1 subclass
    pfam06943
    Location:84 → 108
    zf-LSD1; LSD1 zinc finger

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    258431063..258435471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035958844.1 → XP_035814737.1  uncharacterized protein LOC100285990 isoform X1

    Conserved Domains (2) summary
    pfam06943
    Location:121 → 145
    zf-LSD1; LSD1 zinc finger
    cl26935
    Location:80 → 110
    zf-LSD1; LSD1 zinc finger
Nucleotide Protein
Heading Accession and Version

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