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LOC100284941 uncharacterized LOC100284941 [ Zea mays ]

Gene ID: 100284941, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100284941
Gene description
uncharacterized LOC100284941
Locus tag
ZEAMMB73_Zm00001d043368
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
TCP30; GRMZM2G166946
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Genomic context

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See LOC100284941 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (199974437..199977218)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (197855042..197857823)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100281659 Neighboring gene uncharacterized LOC103651179 Neighboring gene uncharacterized LOC100274836 Neighboring gene uncharacterized LOC100382714 Neighboring gene uncharacterized LOC100192805

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized LOC100284941; uncharacterized protein LOC100284941
Names
TCP family transcription factor containing protein
TCP transcription factor
transcription factor containing protein, TCP family

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001157836.3 → NP_001151308.1  uncharacterized LOC100284941

    See identical proteins and their annotated locations for NP_001151308.1

    Status: VALIDATED

    Source sequence(s)
    EE164260, FL388834, GGGX01010942, GJCA01017428
    UniProtKB/TrEMBL
    A0A3L6FKJ7, B6TZ02
    Conserved Domains (1) summary
    cl23822
    Location:2 → 111
    TCP; TCP family transcription factor

  2. NM_001413231.1 → NP_001400160.1  uncharacterized LOC100284941

    Status: VALIDATED

    Source sequence(s)
    EE164074, EE164260, GGGX01010942, GJCA01017428
    UniProtKB/TrEMBL
    A0A3L6FKJ7, B6TZ02

  3. NM_001413232.1 → NP_001400161.1  uncharacterized LOC100284941

    Status: VALIDATED

    Source sequence(s)
    EE164260, GGGU01009545, GGGX01010942, GJCA01017428
    UniProtKB/TrEMBL
    A0A3L6FKJ7, B6TZ02

  4. NM_001413233.1 → NP_001400162.1  uncharacterized LOC100284941

    Status: VALIDATED

    Source sequence(s)
    DV167869, EC890933, EE162529, EE164260, GGGX01010942, GJCA01017428
    UniProtKB/TrEMBL
    A0A3L6FKJ7, B6TZ02

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    199974437..199977218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008674768.2 → XP_008672990.1  uncharacterized protein LOC100284941 isoform X1

    UniProtKB/TrEMBL
    B6TZ02
    Conserved Domains (1) summary
    cl23822
    Location:2 → 111
    TCP; TCP family transcription factor

  2. XM_008674769.2 → XP_008672991.1  uncharacterized protein LOC100284941 isoform X1

    UniProtKB/TrEMBL
    B6TZ02
    Conserved Domains (1) summary
    cl23822
    Location:2 → 111
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version

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