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LOC100284538 SHI [ Zea mays ]

Gene ID: 100284538, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100284538
Gene description
SHI
Locus tag
ZEAMMB73_Zm00001d053208
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G017606
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Genomic context

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See LOC100284538 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (223000937..223002603, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (220091315..220092981, complement)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g13880 Neighboring gene uncharacterized LOC109945631 Neighboring gene protein ODORANT1 Neighboring gene ER lumen protein retaining receptor C28H8.4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SHI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370656.1 → NP_001357585.1  SHI

    Status: VALIDATED

    Source sequence(s)
    CABHLF010000003, DV494305, EU968773, EY254541, FL155541
    UniProtKB/TrEMBL
    A0A3L6EXT1, A0A8J8YT41, B6TUV8
    Conserved Domains (1) summary
    pfam05142
    Location:94 → 236
    DUF702; Domain of unknown function (DUF702)

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    223000937..223002603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001157433.1: Suppressed sequence

    Description
    NM_001157433.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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