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LOC100283443 steroid reductase DET2 [ Zea mays ]

Gene ID: 100283443, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100283443
Gene description
steroid reductase DET2
Locus tag
ZEAMMB73_Zm00001d042843
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
na1; DET2; GRMZM2G449033
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Genomic context

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See LOC100283443 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (184028349..184029894, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (181821463..181822989, complement)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103651006 Neighboring gene uncharacterized LOC103651005 Neighboring gene uncharacterized LOC100285259 Neighboring gene uncharacterized LOC109944874 Neighboring gene Ataxin-3-like protein Neighboring gene reticulon-like protein B12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Brassinosteroid control of sex determination in maize. Hartwig T, et al. Proc Natl Acad Sci U S A, 2011 Dec 6. PMID 22106275, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brassinosteroid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
steroid reductase DET2
Names
nana plant1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001156344.2 → NP_001149816.1  steroid reductase DET2

    See identical proteins and their annotated locations for NP_001149816.1

    Status: VALIDATED

    Source sequence(s)
    EU964774
    UniProtKB/TrEMBL
    A0A3L6FE67, B6TIF9
    Conserved Domains (1) summary
    cl21511
    Location:15 → 262
    PEMT; Phospholipid methyltransferase

  2. NM_001412536.1 → NP_001399465.1  steroid reductase DET2

    Status: VALIDATED

    Source sequence(s)
    FL472534, GJCA01016976
    UniProtKB/TrEMBL
    A0A3L6FE67, B6TIF9

  3. NM_001412537.1 → NP_001399466.1  steroid reductase DET2

    Status: VALIDATED

    Source sequence(s)
    FL472534, GJCA01016976
    UniProtKB/TrEMBL
    A0A3L6FE67, B6TIF9

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    184028349..184029894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008674687.4 → XP_008672909.1  steroid reductase DET2 isoform X1

    UniProtKB/TrEMBL
    B6TIF9
    Conserved Domains (1) summary
    cl21511
    Location:15 → 262
    PEMT; Phospholipid methyltransferase

  2. XM_008674685.4 → XP_008672907.1  steroid reductase DET2 isoform X1

    See identical proteins and their annotated locations for XP_008672907.1

    UniProtKB/TrEMBL
    A0A3L6FE67, B6TIF9
    Conserved Domains (1) summary
    cl21511
    Location:15 → 262
    PEMT; Phospholipid methyltransferase

  3. XM_008674686.4 → XP_008672908.1  steroid reductase DET2 isoform X1

    UniProtKB/TrEMBL
    B6TIF9
    Conserved Domains (1) summary
    cl21511
    Location:15 → 262
    PEMT; Phospholipid methyltransferase
Nucleotide Protein
Heading Accession and Version

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