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LOC100282824 myb family transcription factor-related protein [ Zea mays ]

Gene ID: 100282824, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100282824
Gene description
myb family transcription factor-related protein
Locus tag
ZEAMMB73_Zm00001d020019
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G064197
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Genomic context

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See LOC100282824 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (87485358..87491210)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (86093904..86099672)

Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease Neighboring gene DNA-binding protein SMUBP-2 Neighboring gene MYB-CC type transfactor Neighboring gene uncharacterized LOC103633985

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SNP discovery via 454 transcriptome sequencing. Barbazuk WB, et al. Plant J, 2007 Sep. PMID 17662031, Free PMC Article
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor-related protein
Names
Protein PHR1-LIKE 3
putative MYB DNA-binding domain superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001155730.2 → NP_001149202.1  myb family transcription factor-related protein isoform 1

    See identical proteins and their annotated locations for NP_001149202.1

    Status: VALIDATED

    Source sequence(s)
    CO528250, DV167268, DV504656, EG272216, GJCA01032332
    UniProtKB/TrEMBL
    A0A3L6E3S8, A0A3L6E3V2, B6TBR6, B6TTD2
    Conserved Domains (2) summary
    TIGR01557
    Location:37 → 93
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:131 → 177
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. NM_001412424.1 → NP_001399353.1  myb family transcription factor-related protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    DT640649, DV167268, DV504656, EG272216, GJCA01032332
    UniProtKB/TrEMBL
    B4FJQ9

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    87485358..87491210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008653241.4 → XP_008651463.1  myb family transcription factor-related protein isoform X1

    UniProtKB/TrEMBL
    B4FJQ9
    Conserved Domains (2) summary
    TIGR01557
    Location:37 → 93
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:131 → 176
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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