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LOC100281765 zinc finger C-x8-C-x5-C-x3-H type family protein [ Zea mays ]

Gene ID: 100281765, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100281765
Gene description
zinc finger C-x8-C-x5-C-x3-H type family protein
Locus tag
ZEAMMB73_Zm00001d001952
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G046968
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Genomic context

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See LOC100281765 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (3688358..3694548)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (3425769..3431916)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100381558 Neighboring gene uncharacterized LOC100286340 Neighboring gene uncharacterized LOC103645802 Neighboring gene glutathione S-transferase T3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger C-x8-C-x5-C-x3-H type family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001154685.2 → NP_001148157.1  zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2

    See identical proteins and their annotated locations for NP_001148157.1

    Status: VALIDATED

    Source sequence(s)
    DR964060, EU957831, GJCA01009278
    UniProtKB/TrEMBL
    A0A3L6FSQ7, A0A3L6FXS8, B6SYL6
    Conserved Domains (1) summary
    pfam16131
    Location:347 → 380
    Torus; Torus domain

  2. NM_001411886.1 → NP_001398815.1  zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    DR964060, GJCA01009278
    UniProtKB/TrEMBL
    C0HEQ8

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    3688358..3694548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008669723.3 → XP_008667945.1  zinc finger C-x8-C-x5-C-x3-H type family protein isoform X1

    UniProtKB/TrEMBL
    C0HEQ8
    Conserved Domains (1) summary
    pfam16131
    Location:395 → 428
    Torus; Torus domain
Nucleotide Protein
Heading Accession and Version

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