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LOC100280553 uncharacterized LOC100280553 [ Zea mays ]

Gene ID: 100280553, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100280553
Gene description
uncharacterized LOC100280553
Locus tag
ZEAMMB73_Zm00001d018081
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
DBP2; pco094376; GRMZM2G055204
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Genomic context

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See LOC100280553 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (216470494..216472338)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (213912427..213914271)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100274100 Neighboring gene putative O-Glycosyl hydrolase superfamily protein Neighboring gene probable trehalose-phosphate phosphatase 4 Neighboring gene nuclear pore complex protein NUP155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Ethylene-responsive transcription factor RAP2-4
Names
AP2 domain-containing protein
DRE-binding protein 2
pco094376(449)
putative AP2/EREBP transcription factor superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001153472.2 → NP_001146944.1  Ethylene-responsive transcription factor RAP2-4

    See identical proteins and their annotated locations for NP_001146944.1

    Status: VALIDATED

    Source sequence(s)
    EU952484, FL199738
    UniProtKB/TrEMBL
    A0A3L6ERR8, A0A8J8XDS1, B6SIB9, C3UZ67
    Conserved Domains (1) summary
    smart00380
    Location:165 → 224
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    216470494..216472338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001279928.1: Suppressed sequence

    Description
    NM_001279928.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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